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CTX-439

Chemical Structure : CTX-439

CAS No.: 2377487-13-1

CTX-439 (CTX439)

Catalog No.: PC-26376Not For Human Use, Lab Use Only.

CTX-439 is a potent, selective, orally bioavailable, ATP-competitive CDK12/13 inhibitor with IC50 of 3.1/ 9.2 nM towards CDK12/Cyclin K and CDK13/Cyclin K, respectively, in cell-free assays.

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Purity & Documentation Purity: >98% (HPLC) Select Batch:

    Biological Activity

    CTX-439 is a potent, selective, orally bioavailable, ATP-competitive CDK12/13 inhibitor with IC50 of 3.1/ 9.2 nM towards CDK12/Cyclin K and CDK13/Cyclin K, respectively, in cell-free assays.
    CTX-439 possesses a highly specific inhibitory activity towards CDK12/13 compared to other members of the CDK family proteins, showing > 550-fold higher binding affinity and 20-fold higher inhibitory activity than the closest family member, CDK9.
    CTX-439 shows high binding affinity towards CDK12 (Kd=0.38 nM).
    CTX-439 downregulated p-S2, but neither phosphorylation of S5 (p-S5) nor phosphorylation of S7 (p-S7) in breast cancer cell line SUM149PT, reduced Serine 423 (S423) of CDK12 phosphorylation level in a dose-dependent manner.
    CTX-439 possesses profound anti-tumor effects with IC50 of 100.5 nM against SUM149PT in cell-based assay, shows anti-tumor activity against a broad range of breast and ovarian cancer cell lines.
    CTX-439 (15-30 mg/kg, p.o.) showed marked in vivo anti-tumor activity in nude mice bearing SUM149PT xenografts.

    Physicochemical Properties

    M.Wt 671.70
    Formula C30H32F3N9O4S
    Appearance Solid
    CAS No.
    Storage
    Solide Powder
    -20°C 12 Months; 4°C 6 Months
    In Solvent
    -80°C 6 Months; -20°C 6 Months
    Shipping
    Solubility

    10 mM in DMSO

    Chemical Name/SMILES

    Butanamide, N-[5-(2-methoxy-5-pyrimidinyl)-2-pyrazinyl]-N-[trans-4-[[4-[5-(methylsulfonyl)-3-pyridinyl]-5-(trifluoromethyl)-2-pyrimidinyl]amino]cyclohexyl]-

    References

    1. Kenichiro Shimokawa, et al. ACS Medicinal Chemistry Letters, June 23, 2026.

    2. Kawahara S, et al. Mol Cancer Ther. 2026 Mar 12. doi: 10.1158/1535-7163.MCT-25-0954.

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